The game will be the best place to find out.
And I expect to have a lot of fun finding out...
XD Post a small projectile detection sensor along the expected angle. You won't know the time they come, but if the enemy ships just leave, your system defence frigates near your colony (you have some there right? right?) can go hang around on the correct bearing a couple of million km out.
Since we assume your DSTS can see enemy ships jumping in and out, you know the bearing the slugs are coming by to incredible accuracy. Compared with interplanetary distances, a couple of million km gives you a comparatively large error tolerance (you can miss the angle by half a degree and it probably won't matter) thus you have alot of wiggle room to put your ships.
You'll have a few minutes warning.
As for landing your stations in PDC hangars, depending on how the game mechanics bear out, it could be instant deploy. >.> Which uh, would be hax.
A TN Aurora version of this scheme (with long range drones) could land the railgun base instantly. Obviously, in NA, you'll probably have tractor beams or tugs or some suitably cheap low-powered thing to move it on/off the planet.
Lol, if we could land ships in PDCs instantly, energy weapon battles against enemy bases became pointless. The bases could recharge on the surface where railguns and lasers can't reach them, then pop up to fire.
<Needs fixing.
Mini-fiction EDIT:
The battle destroys a few PDCs and the retreating enemy ships fired a barrage of rounds (or at least they appeared to). A few bases cannot land due to lack of space and a desperate defence is mounted. Round after round detonates on the thick cloud of dust placed in the way, escort ships spotting a seemingly endless shower.
Ten grueling hours, desperate hours, later, one freakishly lucky metal pellet misses enough sand and a railgun base disappears in a brilliant flash of light, thousands of men and a fine officer didn't even know they were hit before the entire base vapourizes. At the speeds the rounds travel, a hit explodes like a thermonuclear device, even though nothing in the target or round is explosive. It is the only one to make it through, the huge clouds of sand are already dispersing, but for the next decade, ships approaching the colony are restricted to sub 1000 km/s speeds or require shields due to the orbiting dust.
Alternatively:
The system commander (aka. you) could decide that defending the bases isn't worth risking the lives of crew and officers. Abandon the bases to their fate and evacuate!