Instead of cutting back fuctionality, expansion would be better.
Missiles with active, thermal, or em packages are assigned target id's by the fire control. If the missile can 'see' the assigned target it can launch. If it can't, then it can be given a waypoint to travel too ballisticly, if the target is in range when the waypoint of reached then it's tracked too and attacked. If not then the missile self distructs. Later generations of missile guidence can gain capabilities such as braking from ballistic course if target deteched before waypoint, self assign valid targets after IFF interigation, etc.
Missiles without self guidence packages function as today. Add in a chance of the missile not being able to maintain tracking if the fire control changes targets.
Fire control sould probably be a seperate system to activate. That would allow for active scan to not be a hostile action but have active fire control be a hostile trigger.
Possibly expand to thermal and EM missile fire controls that handshake with missile with those guidence packages.
My 2 credits