For the Auto Route by System pathing, if the "Exclude Alien-Controlled" check box is ticked, and you have a diplomatic relationship with an Alien that allows military ships to pass through their territory, will it still avoid their systems?
To use your example, if the US and the Commonwealth had a Military Cooperation Level of Friendly or Allied, would the US Fleet path be routed through through Commonwealth systems or would it still avoid their systems?
Great new features! The progress looks really good.