For the sake of "simplicity" it would be nice to have another ship module: Mass Driver. This module functions like the ground based module, just for ships. Placed near a wormhole it could "massdrive" incoming materials delivered by ships through the wormhole to a destination planet.
Thinking that idea one step further, having a mobile jump gate which receives "Mass Driver Packages" on one side of a wormhole and sends it to a receiving planet on the other side would be even nicer... .
Another idea for the auto-assign-routine: when the routine applies a person to, lets say Frigate 'Bloomington', and during the next turn again want's to assign it to a frigate of the same type, it would be nice if the routine then would keep it on Frigate 'Bloomington' rather than switching it to another one. Not that simple to implement, but, oh well, just suggesting it ;-)