Thanks for the answer. I checked all of the above mentioned possible problems before posting but it'not that.
Here's the Survey Vessel:
Abdiel class Survey Vessel 2,804 tons 42 Crew 310.5 BP TCS 56 TH 250 EM 0
4458 km/s Armour 1-17 Shields 0-0 HTK 15 Sensors 16/0/0/2 DCR 0-0 PPV 0
Maint Life 3.30 Years MSP 534 AFR 126% IFR 1.7% 1YR 74 5YR 1,110 Max Repair 150 MSP
Captain Control Rating 1 BRG
Intended Deployment Time: 18 months Morale Check Required
Apollo Commercial Ion Drive EP250.00 (1) Power 250 Fuel Use 5.30% Signature 250 Explosion 5%
Fuel Capacity 150,000 Litres Range 181.6 billion km (471 days at full power)
Thermal Sensor TH1.5-16.5 (30%) Thermal Sensor TH1.5-16.5 (30%) (1) Sensitivity 16.5 Detect Sig Strength 1000: 32.1m km
Improved Geological Sensors (1) 2 Survey Points Per Hour
This design is classed as a Military Vessel for maintenance purposes
This design is classed as a Survey Ship for auto-assignment purposes
I even designed a pure commercial ship just to double check (so it's pretty random\bad):
Acheron class Freighter 34,962 tons 57 Crew 344.2 BP TCS 699 TH 500 EM 0
715 km/s Armour 1-95 Shields 0-0 HTK 19 Sensors 0/0/0/0 DCR 1-0 PPV 0
MSP 6 Max Repair 62.5 MSP
Cargo 30,000
Commander Control Rating 1 BRG
Intended Deployment Time: 13 months
Apollo Commercial Ion Drive EP250.00 (2) Power 500 Fuel Use 5.30% Signature 250 Explosion 5%
Fuel Capacity 250,000 Litres Range 24.3 billion km (392 days at full power)
This design is classed as a Commercial Vessel for maintenance purposes
This design is classed as a Freighter for auto-assignment purposes